formation à la codilité java Genomic-range-query
La tâche est:
Une chaîne S non indexée S non vide est donnée. La chaîne S est composée de N caractères de l’ensemble des lettres majuscules anglaises A, C, G, T.
Cette chaîne représente en réalité une séquence d'ADN et les lettres majuscules représentent des nucléotides simples.
Vous recevez également des tableaux non vides P et Q non indexés, composés de M entiers. Ces tableaux représentent des requêtes sur les nucléotides minimaux. Nous représentons les lettres de la chaîne S sous forme de nombres entiers 1, 2, 3, 4 dans les tableaux P et Q, où A = 1, C = 2, G = 3, T = 4 et nous supposons que A <C <G <T .
La requête K nécessite que vous trouviez le nucléotide minimal de la plage (P [K], Q [K]), 0 ≤ P [i] ≤ Q [i] <N.
Par exemple, considérons la chaîne S = GACACCATA et les tableaux P, Q tels que:
P[0] = 0 Q[0] = 8
P[1] = 0 Q[1] = 2
P[2] = 4 Q[2] = 5
P[3] = 7 Q[3] = 7
Les nucléotides minimaux de ces plages sont les suivants:
(0, 8) is A identified by 1,
(0, 2) is A identified by 1,
(4, 5) is C identified by 2,
(7, 7) is T identified by 4.
Ecrire une fonction:
class Solution { public int[] solution(String S, int[] P, int[] Q); }
que, étant donné une chaîne d'indexation nulle non vide S composée de N caractères et deux tableaux d'indexation zéro non vides P et Q composés de M entiers, retourne un tableau composé de M caractères spécifiant les réponses consécutives à toutes les requêtes.
La séquence doit être retournée comme:
a Results structure (in C), or
a vector of integers (in C++), or
a Results record (in Pascal), or
an array of integers (in any other programming language).
Par exemple, étant donné la chaîne S = GACACCATA et les tableaux P, Q tels que:
P[0] = 0 Q[0] = 8
P[1] = 0 Q[1] = 2
P[2] = 4 Q[2] = 5
P[3] = 7 Q[3] = 7
la fonction doit renvoyer les valeurs [1, 1, 2, 4], comme expliqué ci-dessus.
Suppose que:
N is an integer within the range [1..100,000];
M is an integer within the range [1..50,000];
each element of array P, Q is an integer within the range [0..N − 1];
P[i] ≤ Q[i];
string S consists only of upper-case English letters A, C, G, T.
Complexité:
expected worst-case time complexity is O(N+M);
expected worst-case space complexity is O(N),
beyond input storage
(not counting the storage required for input arguments).
Les éléments des tableaux d'entrée peuvent être modifiés.
Ma solution est:
class Solution {
public int[] solution(String S, int[] P, int[] Q) {
final char c[] = S.toCharArray();
final int answer[] = new int[P.length];
int tempAnswer;
char tempC;
for (int iii = 0; iii < P.length; iii++) {
tempAnswer = 4;
for (int zzz = P[iii]; zzz <= Q[iii]; zzz++) {
tempC = c[zzz];
if (tempC == 'A') {
tempAnswer = 1;
break;
} else if (tempC == 'C') {
if (tempAnswer > 2) {
tempAnswer = 2;
}
} else if (tempC == 'G') {
if (tempAnswer > 3) {
tempAnswer = 3;
}
}
}
answer[iii] = tempAnswer;
}
return answer;
}
}
Ce n'est pas optimal, je pense que cela est supposé se faire en une boucle. N'importe quel indice, comment puis-je y parvenir?
Vous pouvez vérifier la qualité de votre solution ici https://codility.com/train/ nom de test est Genomic-range-query.
Voici la solution qui a obtenu 100 sur 100 dans codility.com. S'il vous plaît lire sur les sommes préfixes pour comprendre la solution:
public static int[] solveGenomicRange(String S, int[] P, int[] Q) {
//used jagged array to hold the prefix sums of each A, C and G genoms
//we don't need to get prefix sums of T, you will see why.
int[][] genoms = new int[3][S.length()+1];
//if the char is found in the index i, then we set it to be 1 else they are 0
//3 short values are needed for this reason
short a, c, g;
for (int i=0; i<S.length(); i++) {
a = 0; c = 0; g = 0;
if ('A' == (S.charAt(i))) {
a=1;
}
if ('C' == (S.charAt(i))) {
c=1;
}
if ('G' == (S.charAt(i))) {
g=1;
}
//here we calculate prefix sums. To learn what's prefix sums look at here https://codility.com/media/train/3-PrefixSums.pdf
genoms[0][i+1] = genoms[0][i] + a;
genoms[1][i+1] = genoms[1][i] + c;
genoms[2][i+1] = genoms[2][i] + g;
}
int[] result = new int[P.length];
//here we go through the provided P[] and Q[] arrays as intervals
for (int i=0; i<P.length; i++) {
int fromIndex = P[i];
//we need to add 1 to Q[i],
//because our genoms[0][0], genoms[1][0] and genoms[2][0]
//have 0 values by default, look above genoms[0][i+1] = genoms[0][i] + a;
int toIndex = Q[i]+1;
if (genoms[0][toIndex] - genoms[0][fromIndex] > 0) {
result[i] = 1;
} else if (genoms[1][toIndex] - genoms[1][fromIndex] > 0) {
result[i] = 2;
} else if (genoms[2][toIndex] - genoms[2][fromIndex] > 0) {
result[i] = 3;
} else {
result[i] = 4;
}
}
return result;
}
Solution 100/100 simple et élégante, spécifique à un domaine, dans JS avec commentaires!
function solution(S, P, Q) {
var N = S.length, M = P.length;
// dictionary to map nucleotide to impact factor
var impact = {A : 1, C : 2, G : 3, T : 4};
// nucleotide total count in DNA
var currCounter = {A : 0, C : 0, G : 0, T : 0};
// how many times nucleotide repeats at the moment we reach S[i]
var counters = [];
// result
var minImpact = [];
var i;
// count nucleotides
for(i = 0; i <= N; i++) {
counters.Push({A: currCounter.A, C: currCounter.C, G: currCounter.G});
currCounter[S[i]]++;
}
// for every query
for(i = 0; i < M; i++) {
var from = P[i], to = Q[i] + 1;
// compare count of A at the start of query with count at the end of equry
// if counter was changed then query contains A
if(counters[to].A - counters[from].A > 0) {
minImpact.Push(impact.A);
}
// same things for C and others nucleotides with higher impact factor
else if(counters[to].C - counters[from].C > 0) {
minImpact.Push(impact.C);
}
else if(counters[to].G - counters[from].G > 0) {
minImpact.Push(impact.G);
}
else { // one of the counters MUST be changed, so its T
minImpact.Push(impact.T);
}
}
return minImpact;
}
Java, 100/100, mais avec pas de sommes cumulatives/préfixes ! J'ai caché le dernier indice d'occurrence des 3 nucélotides inférieurs dans un tableau "map". Plus tard, je vérifie si le dernier index est compris entre P-Q. Si c'est le cas, il renvoie le nucléotide, s'il n'est pas trouvé, c'est le premier (T):
class Solution {
int[][] lastOccurrencesMap;
public int[] solution(String S, int[] P, int[] Q) {
int N = S.length();
int M = P.length;
int[] result = new int[M];
lastOccurrencesMap = new int[3][N];
int lastA = -1;
int lastC = -1;
int lastG = -1;
for (int i = 0; i < N; i++) {
char c = S.charAt(i);
if (c == 'A') {
lastA = i;
} else if (c == 'C') {
lastC = i;
} else if (c == 'G') {
lastG = i;
}
lastOccurrencesMap[0][i] = lastA;
lastOccurrencesMap[1][i] = lastC;
lastOccurrencesMap[2][i] = lastG;
}
for (int i = 0; i < M; i++) {
int startIndex = P[i];
int endIndex = Q[i];
int minimum = 4;
for (int n = 0; n < 3; n++) {
int lastOccurence = getLastNucleotideOccurrence(startIndex, endIndex, n);
if (lastOccurence != 0) {
minimum = n + 1;
break;
}
}
result[i] = minimum;
}
return result;
}
int getLastNucleotideOccurrence(int startIndex, int endIndex, int nucleotideIndex) {
int[] lastOccurrences = lastOccurrencesMap[nucleotideIndex];
int endValueLastOccurenceIndex = lastOccurrences[endIndex];
if (endValueLastOccurenceIndex >= startIndex) {
return nucleotideIndex + 1;
} else {
return 0;
}
}
}
Voici la solution, en supposant que quelqu'un est toujours intéressé.
class Solution {
public int[] solution(String S, int[] P, int[] Q) {
int[] answer = new int[P.length];
char[] chars = S.toCharArray();
int[][] cumulativeAnswers = new int[4][chars.length + 1];
for (int iii = 0; iii < chars.length; iii++) {
if (iii > 0) {
for (int zzz = 0; zzz < 4; zzz++) {
cumulativeAnswers[zzz][iii + 1] = cumulativeAnswers[zzz][iii];
}
}
switch (chars[iii]) {
case 'A':
cumulativeAnswers[0][iii + 1]++;
break;
case 'C':
cumulativeAnswers[1][iii + 1]++;
break;
case 'G':
cumulativeAnswers[2][iii + 1]++;
break;
case 'T':
cumulativeAnswers[3][iii + 1]++;
break;
}
}
for (int iii = 0; iii < P.length; iii++) {
for (int zzz = 0; zzz < 4; zzz++) {
if ((cumulativeAnswers[zzz][Q[iii] + 1] - cumulativeAnswers[zzz][P[iii]]) > 0) {
answer[iii] = zzz + 1;
break;
}
}
}
return answer;
}
}
Au cas où quelqu'un se soucierait de C:
#include <string.h>
struct Results solution(char *S, int P[], int Q[], int M) {
int i, a, b, N, *pA, *pC, *pG;
struct Results result;
result.A = malloc(sizeof(int) * M);
result.M = M;
// calculate prefix sums
N = strlen(S);
pA = malloc(sizeof(int) * N);
pC = malloc(sizeof(int) * N);
pG = malloc(sizeof(int) * N);
pA[0] = S[0] == 'A' ? 1 : 0;
pC[0] = S[0] == 'C' ? 1 : 0;
pG[0] = S[0] == 'G' ? 1 : 0;
for (i = 1; i < N; i++) {
pA[i] = pA[i - 1] + (S[i] == 'A' ? 1 : 0);
pC[i] = pC[i - 1] + (S[i] == 'C' ? 1 : 0);
pG[i] = pG[i - 1] + (S[i] == 'G' ? 1 : 0);
}
for (i = 0; i < M; i++) {
a = P[i] - 1;
b = Q[i];
if ((pA[b] - pA[a]) > 0) {
result.A[i] = 1;
} else if ((pC[b] - pC[a]) > 0) {
result.A[i] = 2;
} else if ((pG[b] - pG[a]) > 0) {
result.A[i] = 3;
} else {
result.A[i] = 4;
}
}
return result;
}
Voici ma solution. Vous avez 100%. Bien sûr, je devais d'abord vérifier et étudier un peu les sommes de préfixe.
public int[] solution(String S, int[] P, int[] Q){
int[] result = new int[P.length];
int[] factor1 = new int[S.length()];
int[] factor2 = new int[S.length()];
int[] factor3 = new int[S.length()];
int[] factor4 = new int[S.length()];
int factor1Sum = 0;
int factor2Sum = 0;
int factor3Sum = 0;
int factor4Sum = 0;
for(int i=0; i<S.length(); i++){
switch (S.charAt(i)) {
case 'A':
factor1Sum++;
break;
case 'C':
factor2Sum++;
break;
case 'G':
factor3Sum++;
break;
case 'T':
factor4Sum++;
break;
default:
break;
}
factor1[i] = factor1Sum;
factor2[i] = factor2Sum;
factor3[i] = factor3Sum;
factor4[i] = factor4Sum;
}
for(int i=0; i<P.length; i++){
int start = P[i];
int end = Q[i];
if(start == 0){
if(factor1[end] > 0){
result[i] = 1;
}else if(factor2[end] > 0){
result[i] = 2;
}else if(factor3[end] > 0){
result[i] = 3;
}else{
result[i] = 4;
}
}else{
if(factor1[end] > factor1[start-1]){
result[i] = 1;
}else if(factor2[end] > factor2[start-1]){
result[i] = 2;
}else if(factor3[end] > factor3[start-1]){
result[i] = 3;
}else{
result[i] = 4;
}
}
}
return result;
}
Ceci est ma solution JavaScript qui a 100% sur Codility:
function solution(S, P, Q) {
let total = [];
let min;
for (let i = 0; i < P.length; i++) {
const substring = S.slice(P[i], Q[i] + 1);
if (substring.includes('A')) {
min = 1;
} else if (substring.includes('C')) {
min = 2;
} else if (substring.includes('G')) {
min = 3;
} else if (substring.includes('T')) {
min = 4;
}
total.Push(min);
}
return total;
}
Voici ma solution en utilisant Segment Tree O (n) + O (log n) + O (M) temps
public class DNAseq {
public static void main(String[] args) {
String S="CAGCCTA";
int[] P={2, 5, 0};
int[] Q={4, 5, 6};
int [] results=solution(S,P,Q);
System.out.println(results[0]);
}
static class segmentNode{
int l;
int r;
int min;
segmentNode left;
segmentNode right;
}
public static segmentNode buildTree(int[] arr,int l,int r){
if(l==r){
segmentNode n=new segmentNode();
n.l=l;
n.r=r;
n.min=arr[l];
return n;
}
int mid=l+(r-l)/2;
segmentNode le=buildTree(arr,l,mid);
segmentNode re=buildTree(arr,mid+1,r);
segmentNode root=new segmentNode();
root.left=le;
root.right=re;
root.l=le.l;
root.r=re.r;
root.min=Math.min(le.min,re.min);
return root;
}
public static int getMin(segmentNode root,int l,int r){
if(root.l>r || root.r<l){
return Integer.MAX_VALUE;
}
if(root.l>=l&& root.r<=r) {
return root.min;
}
return Math.min(getMin(root.left,l,r),getMin(root.right,l,r));
}
public static int[] solution(String S, int[] P, int[] Q) {
int[] arr=new int[S.length()];
for(int i=0;i<S.length();i++){
switch (S.charAt(i)) {
case 'A':
arr[i]=1;
break;
case 'C':
arr[i]=2;
break;
case 'G':
arr[i]=3;
break;
case 'T':
arr[i]=4;
break;
default:
break;
}
}
segmentNode root=buildTree(arr,0,S.length()-1);
int[] result=new int[P.length];
for(int i=0;i<P.length;i++){
result[i]=getMin(root,P[i],Q[i]);
}
return result;
} }
Voici une solution en C #, l’idée de base est à peu près la même que celle des autres réponses, mais elle peut être plus propre:
using System;
class Solution
{
public int[] solution(string S, int[] P, int[] Q)
{
int N = S.Length;
int M = P.Length;
char[] chars = {'A','C','G','T'};
//Calculate accumulates
int[,] accum = new int[3, N+1];
for (int i = 0; i <= 2; i++)
{
for (int j = 0; j < N; j++)
{
if(S[j] == chars[i]) accum[i, j+1] = accum[i, j] + 1;
else accum[i, j+1] = accum[i, j];
}
}
//Get minimal nucleotides for the given ranges
int diff;
int[] minimums = new int[M];
for (int i = 0; i < M; i++)
{
minimums[i] = 4;
for (int j = 0; j <= 2; j++)
{
diff = accum[j, Q[i]+1] - accum[j, P[i]];
if (diff > 0)
{
minimums[i] = j+1;
break;
}
}
}
return minimums;
}
}
import Java.util.Arrays;
import Java.util.HashMap;
class Solution {
static HashMap<Character, Integer > characterMapping = new HashMap<Character, Integer>(){{
put('A',1);
put('C',2);
put('G',3);
put('T',4);
}};
public static int minimum(int[] arr) {
if (arr.length ==1) return arr[0];
int smallestIndex = 0;
for (int index = 0; index<arr.length; index++) {
if (arr[index]<arr[smallestIndex]) smallestIndex=index;
}
return arr[smallestIndex];
}
public int[] solution(String S, int[] P, int[] Q) {
final char[] characterInput = S.toCharArray();
final int[] integerInput = new int[characterInput.length];
for(int counter=0; counter < characterInput.length; counter++) {
integerInput[counter] = characterMapping.get(characterInput[counter]);
}
int[] result = new int[P.length];
//assuming P and Q have the same length
for(int index =0; index<P.length; index++) {
if (P[index]==Q[index]) {
result[index] = integerInput[P[index]];
break;
}
final int[] subArray = Arrays.copyOfRange(integerInput, P[index], Q[index]+1);
final int minimumValue = minimum(subArray);
result[index]= minimumValue;
}
return result;
}
}
J'espère que cela t'aides.
public int[] solution(String S, int[] P, int[] K) {
// write your code in Java SE 8
char[] sc = S.toCharArray();
int[] A = new int[sc.length];
int[] G = new int[sc.length];
int[] C = new int[sc.length];
int prevA =-1,prevG=-1,prevC=-1;
for(int i=0;i<sc.length;i++){
if(sc[i]=='A')
prevA=i;
else if(sc[i] == 'G')
prevG=i;
else if(sc[i] =='C')
prevC=i;
A[i] = prevA;
G[i] = prevG;
C[i] = prevC;
//System.out.println(A[i]+ " "+G[i]+" "+C[i]);
}
int[] result = new int[P.length];
for(int i=0;i<P.length;i++){
//System.out.println(A[P[i]]+ " "+A[K[i]]+" "+C[P[i]]+" "+C[K[i]]+" "+P[i]+" "+K[i]);
if(A[K[i]] >=P[i] && A[K[i]] <=K[i]){
result[i] =1;
}
else if(C[K[i]] >=P[i] && C[K[i]] <=K[i]){
result[i] =2;
}else if(G[K[i]] >=P[i] && G[K[i]] <=K[i]){
result[i] =3;
}
else{
result[i]=4;
}
}
return result;
}
Voici une solution javascript simple à 100%.
function solution(S, P, Q) {
var A = [];
var C = [];
var G = [];
var T = [];
var result = [];
var i = 0;
S.split('').forEach(function(a) {
if (a === 'A') {
A.Push(i);
} else if (a === 'C') {
C.Push(i);
} else if (a === 'G') {
G.Push(i);
} else {
T.Push(i);
}
i++;
});
function hasNucl(typeArray, start, end) {
return typeArray.some(function(a) {
return a >= P[j] && a <= Q[j];
});
}
for(var j=0; j<P.length; j++) {
if (hasNucl(A, P[j], P[j])) {
result.Push(1)
} else if (hasNucl(C, P[j], P[j])) {
result.Push(2);
} else if (hasNucl(G, P[j], P[j])) {
result.Push(3);
} else {
result.Push(4);
}
}
return result;
}
En rubis (100/100)
def interval_sum x,y,p
p[y+1] - p[x]
end
def solution(s,p,q)
#Hash of arrays with prefix sums
p_sums = {}
respuesta = []
%w(A C G T).each do |letter|
p_sums[letter] = Array.new s.size+1, 0
end
(0...s.size).each do |count|
%w(A C G T).each do |letter|
p_sums[letter][count+1] = p_sums[letter][count]
end if count > 0
case s[count]
when 'A'
p_sums['A'][count+1] += 1
when 'C'
p_sums['C'][count+1] += 1
when 'G'
p_sums['G'][count+1] += 1
when 'T'
p_sums['T'][count+1] += 1
end
end
(0...p.size).each do |count|
x = p[count]
y = q[count]
if interval_sum(x, y, p_sums['A']) > 0 then
respuesta << 1
next
end
if interval_sum(x, y, p_sums['C']) > 0 then
respuesta << 2
next
end
if interval_sum(x, y, p_sums['G']) > 0 then
respuesta << 3
next
end
if interval_sum(x, y, p_sums['T']) > 0 then
respuesta << 4
next
end
end
respuesta
end
La solution php 100/100:
function solution($S, $P, $Q) {
$S = str_split($S);
$len = count($S);
$lep = count($P);
$arr = array();
$result = array();
$clone = array_fill(0, 4, 0);
for($i = 0; $i < $len; $i++){
$arr[$i] = $clone;
switch($S[$i]){
case 'A':
$arr[$i][0] = 1;
break;
case 'C':
$arr[$i][1] = 1;
break;
case 'G':
$arr[$i][2] = 1;
break;
default:
$arr[$i][3] = 1;
break;
}
}
for($i = 1; $i < $len; $i++){
for($j = 0; $j < 4; $j++){
$arr[$i][$j] += $arr[$i - 1][$j];
}
}
for($i = 0; $i < $lep; $i++){
$x = $P[$i];
$y = $Q[$i];
for($a = 0; $a < 4; $a++){
$sub = 0;
if($x - 1 >= 0){
$sub = $arr[$x - 1][$a];
}
if($arr[$y][$a] - $sub > 0){
$result[$i] = $a + 1;
break;
}
}
}
return $result;
}
Quel est le problème avec ma solution en C++? J'ai eu [2,1,1] au lieu de [2,4,1]
#include <iostream>
#include <string>
vector<int> solution(string &S, vector<int> &P, vector<int> &Q)
{
int SumA[S.size()];SumA[0]=0;
int SumC[S.size()];SumC[0]=0;
int SumG[S.size()];SumG[0]=0;
int SumT[S.size()];SumT[0]=0;
for (int unsigned i=0;i<S.size();i++)
{
if (S[i]=='A')
{ SumA[i]++;}
else if (S[i]=='C')
{ SumC[i]++;}
else if (S[i]=='G' )
{ SumG[i]++; }
else {SumT[i]++;}
SumA[i+1] = SumA[i];
SumC[i+1] = SumC[i];
SumG[i+1] = SumG[i];
SumT[i+1] = SumT[i];
}
vector<int> answer(P.size());
for (int unsigned i=0;i<P.size();i++)
{ int Asinrange=SumA[Q[i]+1]-SumA[P[i]];
int Csinrange=SumC[Q[i]+1]-SumC[P[i]];
int Gsinrange=SumG[Q[i]+1]-SumG[P[i]];
int TsInRange =SumT[Q[i]+ 1]- sumT[P[i]]
if (Asinrange>0)
{ answer[i]=1;}
else if (Csinrange>0)
{ answer[i]=2;}
else if (Gsinrange>0)
{ answer[i]=3;}
else
{answer[i]=4;}
}
return answer;
}
Je pense que j'utilise la programmation dynamique. Voici ma solution. Petit espace. Le code est très propre, montre juste mon idée.
class Solution {
public int[] solution(String S, int[] P, int[] Q) {
int[] preDominator = new int[S.length()];
int A = -1;
int C = -1;
int G = -1;
int T = -1;
for (int i = 0; i < S.length(); i++) {
char c = S.charAt(i);
if (c == 'A') {
A = i;
preDominator[i] = -1;
} else if (c == 'C') {
C = i;
preDominator[i] = A;
} else if (c == 'G') {
G = i;
preDominator[i] = Math.max(A, C);
} else {
T = i;
preDominator[i] = Math.max(Math.max(A, C), G);
}
}
int N = preDominator.length;
int M = Q.length;
int[] result = new int[M];
for (int i = 0; i < M; i++) {
int p = P[i];
int q = Math.min(N, Q[i]);
for (int j = q;;) {
if (preDominator[j] < p) {
char c = S.charAt(j);
if (c == 'A') {
result[i] = 1;
} else if (c == 'C') {
result[i] = 2;
} else if (c == 'G') {
result[i] = 3;
} else {
result[i] = 4;
}
break;
}
j = preDominator[j];
}
}
return result;
}
}
Si quelqu'un est toujours intéressé par cet exercice, je partage ma solution Python (100/100 dans Codility).
def solution(S, P, Q):
count = []
for i in range(3):
count.append([0]*(len(S)+1))
for index, i in enumerate(S):
count[0][index+1] = count[0][index] + ( i =='A')
count[1][index+1] = count[1][index] + ( i =='C')
count[2][index+1] = count[2][index] + ( i =='G')
result = []
for i in range(len(P)):
start = P[i]
end = Q[i]+1
if count[0][end] - count[0][start]:
result.append(1)
Elif count[1][end] - count[1][start]:
result.append(2)
Elif count[2][end] - count[2][start]:
result.append(3)
else:
result.append(4)
return result
php 100/100 solution simple
function solution($S, $P, $Q) {
$result = array();
for ($i = 0; $i < count($P); $i++) {
$from = $P[$i];
$to = $Q[$i];
$length = $from >= $to ? $from - $to + 1 : $to - $from + 1;
$new = substr($S, $from, $length);
if (strpos($new, 'A') !== false) {
$result[$i] = 1;
} else {
if (strpos($new, 'C') !== false) {
$result[$i] = 2;
} else {
if (strpos($new, 'G') !== false) {
$result[$i] = 3;
} else {
$result[$i] = 4;
}
}
}
}
return $result;
}
Voici la solution 100% Scala:
def solution(S: String, P: Array[Int], Q: Array[Int]): Array[Int] = {
val resp = for(ind <- 0 to P.length-1) yield {
val sub= S.substring(P(ind),Q(ind)+1)
var factor = 4
if(sub.contains("A")) {factor=1}
else{
if(sub.contains("C")) {factor=2}
else{
if(sub.contains("G")) {factor=3}
}
}
factor
}
return resp.toArray
}
Et performance: https://codility.com/demo/results/trainingEUR4XP-425/
Ma solution C++
vector<int> solution(string &S, vector<int> &P, vector<int> &Q) {
vector<int> impactCount_A(S.size()+1, 0);
vector<int> impactCount_C(S.size()+1, 0);
vector<int> impactCount_G(S.size()+1, 0);
int lastTotal_A = 0;
int lastTotal_C = 0;
int lastTotal_G = 0;
for (int i = (signed)S.size()-1; i >= 0; --i) {
switch(S[i]) {
case 'A':
++lastTotal_A;
break;
case 'C':
++lastTotal_C;
break;
case 'G':
++lastTotal_G;
break;
};
impactCount_A[i] = lastTotal_A;
impactCount_C[i] = lastTotal_C;
impactCount_G[i] = lastTotal_G;
}
vector<int> results(P.size(), 0);
for (int i = 0; i < P.size(); ++i) {
int pIndex = P[i];
int qIndex = Q[i];
int numA = impactCount_A[pIndex]-impactCount_A[qIndex+1];
int numC = impactCount_C[pIndex]-impactCount_C[qIndex+1];
int numG = impactCount_G[pIndex]-impactCount_G[qIndex+1];
if (numA > 0) {
results[i] = 1;
}
else if (numC > 0) {
results[i] = 2;
}
else if (numG > 0) {
results[i] = 3;
}
else {
results[i] = 4;
}
}
return results;
}
J'en sais beaucoup plus mais c'est ma réponse, elle a 100/100 .. J'espère que c'est un peu lisible
class GenomeCounter
{
public char GenomeCode { get; private set; }
public int Value { get; private set; }
private List<long> CountFromStart;
private long currentCount;
public GenomeCounter(char genomeCode, int value)
{
CountFromStart = new List<long>();
GenomeCode = genomeCode;
currentCount = 0;
Value = value;
}
public void Touch()
{
CountFromStart.Add(currentCount);
}
public void Add()
{
currentCount++;
Touch();
}
public long GetCountAt(int i)
{
return CountFromStart[i];
}
}
class Solution
{
static readonly Dictionary<char, int> genomes = new Dictionary<char, int>{
{ 'A',1 },
{ 'C',2 },
{ 'G',3 },
{'T',4}
};
public Solution()
{
GenomeCounters = new Dictionary<char, GenomeCounter>();
foreach (var genome in genomes)
{
GenomeCounters[genome.Key] = new GenomeCounter(genome.Key, genome.Value);
}
}
Dictionary<char, GenomeCounter> GenomeCounters;
int GetMinBetween(string S, int First, int Last)
{
if (First > Last) throw new Exception("Wrong Input");
int min = GenomeCounters[S[First]].Value;
foreach (var genomeCount in GenomeCounters)
{
if (genomeCount.Value.GetCountAt(First) < (genomeCount.Value.GetCountAt(Last)))
{
if (min > genomeCount.Value.Value) min = genomeCount.Value.Value;
}
}
return min;
}
void CalculateTotalCount(string S)
{
for (var i = 0; i < S.Length; i++)
{
foreach (var genome in GenomeCounters)
{
if (genome.Key == S[i]) genome.Value.Add();
else genome.Value.Touch();
}
}
}
public int[] solution(string S, int[] P, int[] Q)
{
// write your code in C# 6.0 with .NET 4.5 (Mono)
int M = P.Length;
int N = S.Length;
List<int> Mins = new List<int>();
CalculateTotalCount(S);
for (int i = 0; i < M; i++)
{
Mins.Add(GetMinBetween(S, P[i], Q[i]));
}
return Mins.ToArray();
}
}
solution de scala 100/100
import scala.annotation.switch
import scala.collection.mutable
object Solution {
def solution(s: String, p: Array[Int], q: Array[Int]): Array[Int] = {
val n = s.length
def arr = mutable.ArrayBuffer.fill(n + 1)(0L)
val a = arr
val c = arr
val g = arr
val t = arr
for (i <- 1 to n) {
def inc(z: mutable.ArrayBuffer[Long]): Unit = z(i) = z(i - 1) + 1L
def shift(z: mutable.ArrayBuffer[Long]): Unit = z(i) = z(i - 1)
val char = s(i - 1)
(char: @switch) match {
case 'A' => inc(a); shift(c); shift(g); shift(t);
case 'C' => shift(a); inc(c); shift(g); shift(t);
case 'G' => shift(a); shift(c); inc(g); shift(t);
case 'T' => shift(a); shift(c); shift(g); inc(t);
}
}
val r = mutable.ArrayBuffer.fill(p.length)(0)
for (i <- p.indices) {
val start = p(i)
val end = q(i) + 1
r(i) =
if (a(start) != a(end)) 1
else if (c(start) != c(end)) 2
else if (g(start) != g(end)) 3
else if (t(start) != t(end)) 4
else 0
}
r.toArray
}
}
Java 100/100
class Solution {
public int[] solution(String S, int[] P, int[] Q) {
int qSize = Q.length;
int[] answers = new int[qSize];
char[] sequence = S.toCharArray();
int[][] occCount = new int[3][sequence.length+1];
int[] geneImpactMap = new int['G'+1];
geneImpactMap['A'] = 0;
geneImpactMap['C'] = 1;
geneImpactMap['G'] = 2;
if(sequence[0] != 'T') {
occCount[geneImpactMap[sequence[0]]][0]++;
}
for(int i = 0; i < sequence.length; i++) {
occCount[0][i+1] = occCount[0][i];
occCount[1][i+1] = occCount[1][i];
occCount[2][i+1] = occCount[2][i];
if(sequence[i] != 'T') {
occCount[geneImpactMap[sequence[i]]][i+1]++;
}
}
for(int j = 0; j < qSize; j++) {
for(int k = 0; k < 3; k++) {
if(occCount[k][Q[j]+1] - occCount[k][P[j]] > 0) {
answers[j] = k+1;
break;
}
answers[j] = 4;
}
}
return answers;
}
}
/ * 100/100 solution C++ . Utilisation des sommes de préfixe. Premièrement, convertir les caractères en entier dans la variable nuc. Ensuite, dans un vecteur bidimensionnel, nous comptabilisons l'apparition en S de chaque nucléoside x dans son préfixe respectif [s] [x]. Il ne reste plus qu’à trouver le nucléuide inférieur qui s’est produit dans chaque intervalle K.
*/. solution de vecteur (chaîne & S, vecteur & P, vecteur & Q) {
int n=S.size();
int m=P.size();
vector<vector<int> > prefix_sum(n+1,vector<int>(4,0));
int nuc;
//prefix occurrence sum
for (int s=0;s<n; s++) {
nuc = S.at(s) == 'A' ? 1 : (S.at(s) == 'C' ? 2 : (S.at(s) == 'G' ? 3 : 4) );
for (int u=0;u<4;u++) {
prefix_sum[s+1][u] = prefix_sum[s][u] + ((u+1)==nuc?1:0);
}
}
//find minimal impact factor in each interval K
int lower_impact_factor;
for (int k=0;k<m;k++) {
lower_impact_factor=4;
for (int u=2;u>=0;u--) {
if (prefix_sum[Q[k]+1][u] - prefix_sum[P[k]][u] != 0)
lower_impact_factor = u+1;
}
P[k]=lower_impact_factor;
}
return P;
}
Solution Perl 100/100:
sub solution {
my ($S, $P, $Q)=@_; my @P=@$P; my @Q=@$Q;
my @_A = (0), @_C = (0), @_G = (0), @ret =();
foreach (split //, $S)
{
Push @_A, $_A[-1] + ($_ eq 'A' ? 1 : 0);
Push @_C, $_C[-1] + ($_ eq 'C' ? 1 : 0);
Push @_G, $_G[-1] + ($_ eq 'G' ? 1 : 0);
}
foreach my $i (0..$#P)
{
my $from_index = $P[$i];
my $to_index = $Q[$i] + 1;
if ( $_A[$to_index] - $_A[$from_index] > 0 )
{
Push @ret, 1;
next;
}
if ( $_C[$to_index] - $_C[$from_index] > 0 )
{
Push @ret, 2;
next;
}
if ( $_G[$to_index] - $_G[$from_index] > 0 )
{
Push @ret, 3;
next;
}
Push @ret, 4
}
return @ret;
}
Ce programme a obtenu le score 100 et les performances en matière de performances ont un avantage sur les autres codes Java énumérés ci-dessus!
Le code peut être trouvé ici .
public class GenomicRange {
final int Index_A=0, Index_C=1, Index_G=2, Index_T=3;
final int A=1, C=2, G=3, T=4;
public static void main(String[] args) {
GenomicRange gen = new GenomicRange();
int[] M = gen.solution( "GACACCATA", new int[] { 0,0,4,7 } , new int[] { 8,2,5,7 } );
System.out.println(Arrays.toString(M));
}
public int[] solution(String S, int[] P, int[] Q) {
int[] M = new int[P.length];
char[] charArr = S.toCharArray();
int[][] occCount = new int[3][S.length()+1];
int charInd = getChar(charArr[0]);
if(charInd!=3) {
occCount[charInd][1]++;
}
for(int sInd=1; sInd<S.length(); sInd++) {
charInd = getChar(charArr[sInd]);
if(charInd!=3)
occCount[charInd][sInd+1]++;
occCount[Index_A][sInd+1]+=occCount[Index_A][sInd];
occCount[Index_C][sInd+1]+=occCount[Index_C][sInd];
occCount[Index_G][sInd+1]+=occCount[Index_G][sInd];
}
for(int i=0;i<P.length;i++) {
int a,c,g;
if(Q[i]+1>=occCount[0].length) continue;
a = occCount[Index_A][Q[i]+1] - occCount[Index_A][P[i]];
c = occCount[Index_C][Q[i]+1] - occCount[Index_C][P[i]];
g = occCount[Index_G][Q[i]+1] - occCount[Index_G][P[i]];
M[i] = a>0? A : c>0 ? C : g>0 ? G : T;
}
return M;
}
private int getChar(char c) {
return ((c=='A') ? Index_A : ((c=='C') ? Index_C : ((c=='G') ? Index_G : Index_T)));
}
}
static public int[] solution(String S, int[] P, int[] Q) {
// write your code in Java SE 8
int A[] = new int[S.length() + 1], C[] = new int[S.length() + 1], G[] = new int[S.length() + 1];
int last_a = 0, last_c = 0, last_g = 0;
int results[] = new int[P.length];
int p = 0, q = 0;
for (int i = S.length() - 1; i >= 0; i -= 1) {
switch (S.charAt(i)) {
case 'A': {
last_a += 1;
break;
}
case 'C': {
last_c += 1;
break;
}
case 'G': {
last_g += 1;
break;
}
}
A[i] = last_a;
G[i] = last_g;
C[i] = last_c;
}
for (int i = 0; i < P.length; i++) {
p = P[i];
q = Q[i];
if (A[p] - A[q + 1] > 0) {
results[i] = 1;
} else if (C[p] - C[q + 1] > 0) {
results[i] = 2;
} else if (G[p] - G[q + 1] > 0) {
results[i] = 3;
} else {
results[i] = 4;
}
}
return results;
}
Voici ma solution Java (100/100):
class Solution {
private ImpactFactorHolder[] mHolder;
private static final int A=0,C=1,G=2,T=3;
public int[] solution(String S, int[] P, int[] Q) {
mHolder = createImpactHolderArray(S);
int queriesLength = P.length;
int[] result = new int[queriesLength];
for (int i = 0; i < queriesLength; ++i ) {
int value = 0;
if( P[i] == Q[i]) {
value = lookupValueForIndex(S.charAt(P[i])) + 1;
} else {
value = calculateMinImpactFactor(P[i], Q[i]);
}
result[i] = value;
}
return result;
}
public int calculateMinImpactFactor(int P, int Q) {
int minImpactFactor = 3;
for (int nucleotide = A; nucleotide <= T; ++nucleotide ) {
int qValue = mHolder[nucleotide].mOcurrencesSum[Q];
int pValue = mHolder[nucleotide].mOcurrencesSum[P];
// handling special cases when the less value is assigned on the P index
if( P-1 >= 0 ) {
pValue = mHolder[nucleotide].mOcurrencesSum[P-1] == 0 ? 0 : pValue;
} else if ( P == 0 ) {
pValue = mHolder[nucleotide].mOcurrencesSum[P] == 1 ? 0 : pValue;
}
if ( qValue - pValue > 0) {
minImpactFactor = nucleotide;
break;
}
}
return minImpactFactor + 1;
}
public int lookupValueForIndex(char nucleotide) {
int value = 0;
switch (nucleotide) {
case 'A' :
value = A;
break;
case 'C' :
value = C;
break;
case 'G':
value = G;
break;
case 'T':
value = T;
break;
default:
break;
}
return value;
}
public ImpactFactorHolder[] createImpactHolderArray(String S) {
int length = S.length();
ImpactFactorHolder[] holder = new ImpactFactorHolder[4];
holder[A] = new ImpactFactorHolder(1,'A', length);
holder[C] = new ImpactFactorHolder(2,'C', length);
holder[G] = new ImpactFactorHolder(3,'G', length);
holder[T] = new ImpactFactorHolder(4,'T', length);
int i =0;
for(char c : S.toCharArray()) {
int nucleotide = lookupValueForIndex(c);
++holder[nucleotide].mAcum;
holder[nucleotide].mOcurrencesSum[i] = holder[nucleotide].mAcum;
holder[A].mOcurrencesSum[i] = holder[A].mAcum;
holder[C].mOcurrencesSum[i] = holder[C].mAcum;
holder[G].mOcurrencesSum[i] = holder[G].mAcum;
holder[T].mOcurrencesSum[i] = holder[T].mAcum;
++i;
}
return holder;
}
private static class ImpactFactorHolder {
public ImpactFactorHolder(int impactFactor, char nucleotide, int length) {
mImpactFactor = impactFactor;
mNucleotide = nucleotide;
mOcurrencesSum = new int[length];
mAcum = 0;
}
int mImpactFactor;
char mNucleotide;
int[] mOcurrencesSum;
int mAcum;
}
}
Lien: https://codility.com/demo/results/demoJFB5EV-EG8/ .__ Je suis impatient de mettre en œuvre un arbre de segment similaire à la solution @Abhishek Kumar
la solution de pshemek se limite à la complexité de l'espace (O (N)) - même avec le tableau à deux dimensions et le tableau de réponses, car une constante (4) est utilisée pour le tableau à deux dimensions. Cette solution s’intègre également dans la complexité de calcul - alors que la mienne est O (N ^ 2) - bien que la complexité de calcul soit beaucoup moins importante car elle saute des plages entières contenant des valeurs minimales.
J'ai essayé - mais le mien finit par utiliser plus d'espace - mais me semble plus intuitif (C #):
public static int[] solution(String S, int[] P, int[] Q)
{
const int MinValue = 1;
Dictionary<char, int> stringValueTable = new Dictionary<char,int>(){ {'A', 1}, {'C', 2}, {'G', 3}, {'T', 4} };
char[] inputArray = S.ToCharArray();
int[,] minRangeTable = new int[S.Length, S.Length]; // The meaning of this table is [x, y] where x is the start index and y is the end index and the value is the min range - if 0 then it is the min range (whatever that is)
for (int startIndex = 0; startIndex < S.Length; ++startIndex)
{
int currentMinValue = 4;
int minValueIndex = -1;
for (int endIndex = startIndex; (endIndex < S.Length) && (minValueIndex == -1); ++endIndex)
{
int currentValue = stringValueTable[inputArray[endIndex]];
if (currentValue < currentMinValue)
{
currentMinValue = currentValue;
if (currentMinValue == MinValue) // We can stop iterating - because anything with this index in its range will always be minimal
minValueIndex = endIndex;
else
minRangeTable[startIndex, endIndex] = currentValue;
}
else
minRangeTable[startIndex, endIndex] = currentValue;
}
if (minValueIndex != -1) // Skip over this index - since it is minimal
startIndex = minValueIndex; // We would have a "+ 1" here - but the "auto-increment" in the for statement will get us past this index
}
int[] result = new int[P.Length];
for (int outputIndex = 0; outputIndex < result.Length; ++outputIndex)
{
result[outputIndex] = minRangeTable[P[outputIndex], Q[outputIndex]];
if (result[outputIndex] == 0) // We could avoid this if we initialized our 2-d array with 1's
result[outputIndex] = 1;
}
return result;
}
Dans la réponse de pshemek, le "truc" de la deuxième boucle est simplement que, une fois que vous avez déterminé, vous avez trouvé une plage avec la valeur minimale, vous n'avez pas besoin de continuer à itérer. Pas sûr que ça aide.