Ensemble de test de train fractionné Keras lors de l'utilisation d'ImageDataGenerator
J'ai un seul répertoire qui contient des sous-dossiers (selon les étiquettes) d'images. Je veux diviser ces données en train et ensemble de test lors de l'utilisation d'ImageDataGenerator dans Keras. Bien que model.fit () en keras ait un argument validation_split pour spécifier la division, je n'ai pas pu trouver la même chose pour model.fit_generator (). Comment faire ?
train_datagen = ImageDataGenerator(rescale=1./255,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=True)
train_generator = train_datagen.flow_from_directory(
train_data_dir,
target_size=(img_width, img_height),
batch_size=32,
class_mode='binary')
model.fit_generator(
train_generator,
samples_per_Epoch=nb_train_samples,
nb_Epoch=nb_Epoch,
validation_data=??,
nb_val_samples=nb_validation_samples)
Je n'ai pas de répertoire séparé pour les données de validation, je dois le séparer des données de formation
Keras a maintenant ajouté la division Train/validation à partir d'un seul répertoire à l'aide d'ImageDataGenerator:
train_datagen = ImageDataGenerator(rescale=1./255,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=True,
validation_split=0.2) # set validation split
train_generator = train_datagen.flow_from_directory(
train_data_dir,
target_size=(img_height, img_width),
batch_size=batch_size,
class_mode='binary',
subset='training') # set as training data
validation_generator = train_datagen.flow_from_directory(
train_data_dir, # same directory as training data
target_size=(img_height, img_width),
batch_size=batch_size,
class_mode='binary',
subset='validation') # set as validation data
model.fit_generator(
train_generator,
steps_per_Epoch = train_generator.samples // batch_size,
validation_data = validation_generator,
validation_steps = validation_generator.samples // batch_size,
epochs = nb_epochs)
J'ai un PR pour cela. Une façon consiste à hacher les noms de fichiers et à effectuer une affectation de variante.
Exemple:
# -*- coding: utf-8 -*-
"""Train model using transfer learning."""
import os
import re
import glob
import hashlib
import argparse
import warnings
import six
import numpy as np
import tensorflow as tf
from tensorflow.python.platform import gfile
from keras.models import Model
from keras import backend as K
from keras.optimizers import SGD
from keras.layers import Dense, GlobalAveragePooling2D, Input
from keras.applications.inception_v3 import InceptionV3
from keras.preprocessing.image import (ImageDataGenerator, Iterator,
array_to_img, img_to_array, load_img)
from keras.callbacks import ModelCheckpoint, TensorBoard, EarlyStopping
RANDOM_SEED = 0
MAX_NUM_IMAGES_PER_CLASS = 2 ** 27 - 1 # ~134M
VALID_IMAGE_FORMATS = frozenset(['jpg', 'jpeg', 'JPG', 'JPEG'])
# we chose to train the top 2 inception blocks
BATCH_SIZE = 100
TRAINABLE_LAYERS = 172
INCEPTIONV3_BASE_LAYERS = len(InceptionV3(weights=None, include_top=False).layers)
STEPS_PER_Epoch = 625
VALIDATION_STEPS = 100
MODEL_INPUT_WIDTH = 299
MODEL_INPUT_HEIGHT = 299
MODEL_INPUT_DEPTH = 3
FC_LAYER_SIZE = 1024
# Helper: Save the model.
checkpointer = ModelCheckpoint(
filepath='./output/checkpoints/inception.{Epoch:03d}-{val_loss:.2f}.hdf5',
verbose=1,
save_best_only=True)
# Helper: Stop when we stop learning.
early_stopper = EarlyStopping(patience=10)
# Helper: TensorBoard
tensorboard = TensorBoard(log_dir='./output/')
def as_bytes(bytes_or_text, encoding='utf-8'):
"""Converts bytes or unicode to `bytes`, using utf-8 encoding for text.
# Arguments
bytes_or_text: A `bytes`, `str`, or `unicode` object.
encoding: A string indicating the charset for encoding unicode.
# Returns
A `bytes` object.
# Raises
TypeError: If `bytes_or_text` is not a binary or unicode string.
"""
if isinstance(bytes_or_text, six.text_type):
return bytes_or_text.encode(encoding)
Elif isinstance(bytes_or_text, bytes):
return bytes_or_text
else:
raise TypeError('Expected binary or unicode string, got %r' %
(bytes_or_text,))
class CustomImageDataGenerator(ImageDataGenerator):
def flow_from_image_lists(self, image_lists,
category, image_dir,
target_size=(256, 256), color_mode='rgb',
class_mode='categorical',
batch_size=32, shuffle=True, seed=None,
save_to_dir=None,
save_prefix='',
save_format='jpeg'):
return ImageListIterator(
image_lists, self,
category, image_dir,
target_size=target_size, color_mode=color_mode,
class_mode=class_mode,
data_format=self.data_format,
batch_size=batch_size, shuffle=shuffle, seed=seed,
save_to_dir=save_to_dir,
save_prefix=save_prefix,
save_format=save_format)
class ImageListIterator(Iterator):
"""Iterator capable of reading images from a directory on disk.
# Arguments
image_lists: Dictionary of training images for each label.
image_data_generator: Instance of `ImageDataGenerator`
to use for random transformations and normalization.
target_size: Tuple of integers, dimensions to resize input images to.
color_mode: One of `"rgb"`, `"grayscale"`. Color mode to read images.
classes: Optional list of strings, names of sudirectories
containing images from each class (e.g. `["dogs", "cats"]`).
It will be computed automatically if not set.
class_mode: Mode for yielding the targets:
`"binary"`: binary targets (if there are only two classes),
`"categorical"`: categorical targets,
`"sparse"`: integer targets,
`None`: no targets get yielded (only input images are yielded).
batch_size: Integer, size of a batch.
shuffle: Boolean, whether to shuffle the data between epochs.
seed: Random seed for data shuffling.
data_format: String, one of `channels_first`, `channels_last`.
save_to_dir: Optional directory where to save the pictures
being yielded, in a viewable format. This is useful
for visualizing the random transformations being
applied, for debugging purposes.
save_prefix: String prefix to use for saving sample
images (if `save_to_dir` is set).
save_format: Format to use for saving sample images
(if `save_to_dir` is set).
"""
def __init__(self, image_lists, image_data_generator,
category, image_dir,
target_size=(256, 256), color_mode='rgb',
class_mode='categorical',
batch_size=32, shuffle=True, seed=None,
data_format=None,
save_to_dir=None, save_prefix='', save_format='jpeg'):
if data_format is None:
data_format = K.image_data_format()
classes = list(image_lists.keys())
self.category = category
self.num_class = len(classes)
self.image_lists = image_lists
self.image_dir = image_dir
how_many_files = 0
for label_name in classes:
for _ in self.image_lists[label_name][category]:
how_many_files += 1
self.samples = how_many_files
self.class2id = dict(Zip(classes, range(len(classes))))
self.id2class = dict((v, k) for k, v in self.class2id.items())
self.classes = np.zeros((self.samples,), dtype='int32')
self.image_data_generator = image_data_generator
self.target_size = Tuple(target_size)
if color_mode not in {'rgb', 'grayscale'}:
raise ValueError('Invalid color mode:', color_mode,
'; expected "rgb" or "grayscale".')
self.color_mode = color_mode
self.data_format = data_format
if self.color_mode == 'rgb':
if self.data_format == 'channels_last':
self.image_shape = self.target_size + (3,)
else:
self.image_shape = (3,) + self.target_size
else:
if self.data_format == 'channels_last':
self.image_shape = self.target_size + (1,)
else:
self.image_shape = (1,) + self.target_size
if class_mode not in {'categorical', 'binary', 'sparse', None}:
raise ValueError('Invalid class_mode:', class_mode,
'; expected one of "categorical", '
'"binary", "sparse", or None.')
self.class_mode = class_mode
self.save_to_dir = save_to_dir
self.save_prefix = save_prefix
self.save_format = save_format
i = 0
self.filenames = []
for label_name in classes:
for j, _ in enumerate(self.image_lists[label_name][category]):
self.classes[i] = self.class2id[label_name]
img_path = get_image_path(self.image_lists,
label_name,
j,
self.image_dir,
self.category)
self.filenames.append(img_path)
i += 1
print("Found {} {} files".format(len(self.filenames), category))
super(ImageListIterator, self).__init__(self.samples, batch_size, shuffle,
seed)
def next(self):
"""For python 2.x.
# Returns
The next batch.
"""
with self.lock:
index_array, current_index, current_batch_size = next(
self.index_generator)
# The transformation of images is not under thread lock
# so it can be done in parallel
batch_x = np.zeros((current_batch_size,) + self.image_shape,
dtype=K.floatx())
grayscale = self.color_mode == 'grayscale'
# build batch of image data
for i, j in enumerate(index_array):
img = load_img(self.filenames[j],
grayscale=grayscale,
target_size=self.target_size)
x = img_to_array(img, data_format=self.data_format)
x = self.image_data_generator.random_transform(x)
x = self.image_data_generator.standardize(x)
batch_x[i] = x
# optionally save augmented images to disk for debugging purposes
if self.save_to_dir:
for i in range(current_batch_size):
img = array_to_img(batch_x[i], self.data_format, scale=True)
fname = '{prefix}_{index}_{hash}.{format}'.format(
prefix=self.save_prefix,
index=current_index + i,
hash=np.random.randint(10000),
format=self.save_format)
img.save(os.path.join(self.save_to_dir, fname))
# build batch of labels
if self.class_mode == 'sparse':
batch_y = self.classes[index_array]
Elif self.class_mode == 'binary':
batch_y = self.classes[index_array].astype(K.floatx())
Elif self.class_mode == 'categorical':
batch_y = np.zeros((len(batch_x), self.num_class),
dtype=K.floatx())
for i, label in enumerate(self.classes[index_array]):
batch_y[i, label] = 1.
else:
return batch_x
return batch_x, batch_y
# https://github.com/tensorflow/tensorflow/blob/master/tensorflow/examples/image_retraining/retrain.py
def create_image_lists(image_dir, validation_pct=10):
"""Builds a list of training images from the file system.
Analyzes the sub folders in the image directory, splits them into stable
training, testing, and validation sets, and returns a data structure
describing the lists of images for each label and their paths.
# Arguments
image_dir: string path to a folder containing subfolders of images.
validation_pct: integer percentage of images reserved for validation.
# Returns
dictionary of label subfolder, with images split into training
and validation sets within each label.
"""
if not os.path.isdir(image_dir):
raise ValueError("Image directory {} not found.".format(image_dir))
image_lists = {}
sub_dirs = [x[0] for x in os.walk(image_dir)]
sub_dirs_without_root = sub_dirs[1:] # first element is root directory
for sub_dir in sub_dirs_without_root:
file_list = []
dir_name = os.path.basename(sub_dir)
if dir_name == image_dir:
continue
print("Looking for images in '{}'".format(dir_name))
for extension in VALID_IMAGE_FORMATS:
file_glob = os.path.join(image_dir, dir_name, '*.' + extension)
file_list.extend(glob.glob(file_glob))
if not file_list:
warnings.warn('No files found')
continue
if len(file_list) < 20:
warnings.warn('Folder has less than 20 images, which may cause '
'issues.')
Elif len(file_list) > MAX_NUM_IMAGES_PER_CLASS:
warnings.warn('WARNING: Folder {} has more than {} images. Some '
'images will never be selected.'
.format(dir_name, MAX_NUM_IMAGES_PER_CLASS))
label_name = re.sub(r'[^a-z0-9]+', ' ', dir_name.lower())
training_images = []
validation_images = []
for file_name in file_list:
base_name = os.path.basename(file_name)
# Get the hash of the file name and perform variant assignment.
hash_name = hashlib.sha1(as_bytes(base_name)).hexdigest()
hash_pct = ((int(hash_name, 16) % (MAX_NUM_IMAGES_PER_CLASS + 1)) *
(100.0 / MAX_NUM_IMAGES_PER_CLASS))
if hash_pct < validation_pct:
validation_images.append(base_name)
else:
training_images.append(base_name)
image_lists[label_name] = {
'dir': dir_name,
'training': training_images,
'validation': validation_images,
}
return image_lists
# https://github.com/tensorflow/tensorflow/blob/master/tensorflow/examples/image_retraining/retrain.py
def get_image_path(image_lists, label_name, index, image_dir, category):
""""Returns a path to an image for a label at the given index.
# Arguments
image_lists: Dictionary of training images for each label.
label_name: Label string we want to get an image for.
index: Int offset of the image we want. This will be moduloed by the
available number of images for the label, so it can be arbitrarily large.
image_dir: Root folder string of the subfolders containing the training
images.
category: Name string of set to pull images from - training, testing, or
validation.
# Returns
File system path string to an image that meets the requested parameters.
"""
if label_name not in image_lists:
raise ValueError('Label does not exist ', label_name)
label_lists = image_lists[label_name]
if category not in label_lists:
raise ValueError('Category does not exist ', category)
category_list = label_lists[category]
if not category_list:
raise ValueError('Label %s has no images in the category %s.',
label_name, category)
mod_index = index % len(category_list)
base_name = category_list[mod_index]
sub_dir = label_lists['dir']
full_path = os.path.join(image_dir, sub_dir, base_name)
return full_path
def get_generators(image_lists, image_dir):
train_datagen = CustomImageDataGenerator(rescale=1. / 255,
horizontal_flip=True)
test_datagen = CustomImageDataGenerator(rescale=1. / 255)
train_generator = train_datagen.flow_from_image_lists(
image_lists=image_lists,
category='training',
image_dir=image_dir,
target_size=(MODEL_INPUT_HEIGHT, MODEL_INPUT_WIDTH),
batch_size=BATCH_SIZE,
class_mode='categorical',
seed=RANDOM_SEED)
validation_generator = test_datagen.flow_from_image_lists(
image_lists=image_lists,
category='validation',
image_dir=image_dir,
target_size=(MODEL_INPUT_HEIGHT, MODEL_INPUT_WIDTH),
batch_size=BATCH_SIZE,
class_mode='categorical',
seed=RANDOM_SEED)
return train_generator, validation_generator
def get_model(num_classes, weights='imagenet'):
# create the base pre-trained model
# , input_tensor=input_tensor
base_model = InceptionV3(weights=weights, include_top=False)
# add a global spatial average pooling layer
x = base_model.output
x = GlobalAveragePooling2D()(x)
# let's add a fully-connected layer
x = Dense(FC_LAYER_SIZE, activation='relu')(x)
# and a logistic layer -- let's say we have 2 classes
predictions = Dense(num_classes, activation='softmax')(x)
# this is the model we will train
model = Model(inputs=[base_model.input], outputs=[predictions])
return model
def get_top_layer_model(model):
"""Used to train just the top layers of the model."""
# first: train only the top layers (which were randomly initialized)
# i.e. freeze all convolutional InceptionV3 layers
for layer in model.layers[:INCEPTIONV3_BASE_LAYERS]:
layer.trainable = False
for layer in model.layers[INCEPTIONV3_BASE_LAYERS:]:
layer.trainable = True
# compile the model (should be done after setting layers to non-trainable)
model.compile(optimizer='rmsprop', loss='categorical_crossentropy',
metrics=['accuracy'])
return model
def get_mid_layer_model(model):
"""After we fine-tune the dense layers, train deeper."""
# freeze the first TRAINABLE_LAYER_INDEX layers and unfreeze the rest
for layer in model.layers[:TRAINABLE_LAYERS]:
layer.trainable = False
for layer in model.layers[TRAINABLE_LAYERS:]:
layer.trainable = True
# we need to recompile the model for these modifications to take effect
# we use SGD with a low learning rate
model.compile(optimizer=SGD(lr=0.0001, momentum=0.9),
loss='categorical_crossentropy',
metrics=['accuracy'])
return model
def train_model(model, epochs, generators, callbacks=None):
train_generator, validation_generator = generators
model.fit_generator(
train_generator,
steps_per_Epoch=STEPS_PER_Epoch,
validation_data=validation_generator,
validation_steps=VALIDATION_STEPS,
epochs=epochs,
callbacks=callbacks)
return model
def main(image_dir, validation_pct):
sub_dirs = [x[0] for x in gfile.Walk(image_dir)]
num_classes = len(sub_dirs) - 1
print("Number of classes found: {}".format(num_classes))
model = get_model(num_classes)
print("Using validation percent of %{}".format(validation_pct))
image_lists = create_image_lists(image_dir, validation_pct)
generators = get_generators(image_lists, image_dir)
# Get and train the top layers.
model = get_top_layer_model(model)
model = train_model(model, epochs=10, generators=generators)
# Get and train the mid layers.
model = get_mid_layer_model(model)
_ = train_model(model, epochs=100, generators=generators,
callbacks=[checkpointer, early_stopper, tensorboard])
# save model
model.save('./output/model.hdf5', overwrite=True)
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument('--image-dir', required=True, help='data directory')
parser.add_argument('--validation-pct', default=10, help='validation percentage')
args = parser.parse_args()
os.makedirs('./output/checkpoints/', exist_ok=True)
main(**vars(args))