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Bibliothèques natives Hadoop non disponibles sous OS/X

J'ai téléchargé le code source hadoop à partir de github et l'ai compilé avec l'option native:

mvn package -Pdist,native -DskipTests -Dtar -Dmaven.javadoc.skip=true

J'ai ensuite copié les fichiers .dylib dans le répertoire $ HADOOP_HOME/lib 

cp -p hadoop-common-project/hadoop-common/target/hadoop-common-2.7.1/lib/native/*.dylib /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/lib

LD_LIBRARY_PATH a été mis à jour et hdfs redémarré:

 echo $LD_LIBRARY_PATH
 /usr/local/Cellar/hadoop/2.7.2/libexec/lib:
 /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/common/lib:/Library/Java/JavaVirtualMachines/jdk1.8.0_92.jdk/Contents/Home//jre/lib

(Remarque: cela signifie également que la réponse à erreur «Impossible de charger la bibliothèque native-hadoop pour votre plate-forme Hadoop» sur l'erreur docker-spark? Ne fonctionne pas pour moi ..)

Mais checknative retourne toujours uniformément false:

$stop-dfs.sh && start-dfs.sh && hadoop checknative
16/06/13 16:12:32 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-Java classes where applicable
Stopping namenodes on [sparkbook]
sparkbook: stopping namenode
localhost: stopping datanode
Stopping secondary namenodes [0.0.0.0]
0.0.0.0: stopping secondarynamenode
16/06/13 16:12:50 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-Java classes where applicable
16/06/13 16:12:50 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-Java classes where applicable
Starting namenodes on [sparkbook]
sparkbook: starting namenode, logging to /usr/local/Cellar/hadoop/2.7.2/libexec/logs/hadoop-macuser-namenode-sparkbook.out
localhost: starting datanode, logging to /usr/local/Cellar/hadoop/2.7.2/libexec/logs/hadoop-macuser-datanode-sparkbook.out
Starting secondary namenodes [0.0.0.0]
0.0.0.0: starting secondarynamenode, logging to /usr/local/Cellar/hadoop/2.7.2/libexec/logs/hadoop-macuser-secondarynamenode-sparkbook.out
16/06/13 16:13:05 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-Java classes where applicable
16/06/13 16:13:05 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-Java classes where applicable
Native library checking:
hadoop:  false
zlib:    false
snappy:  false
lz4:     false
bzip2:   false
openssl: false
macoshadoopnativelibrary
12
javadba

Pour que cela fonctionne sur une nouvelle installation de macOS 10.12, je devais effectuer les opérations suivantes:

  1. Installez les dépendances de construction en utilisant homebrew :

    brew install cmake maven openssl [email protected] snappy

  2. Découvrez le code source de hadoop

    git clone https://github.com/Apache/hadoop.git
cd hadoop
git checkout rel/release-2.7.3

  3. Appliquez le correctif ci-dessous à la construction:

    diff --git a/hadoop-common-project/hadoop-common/src/CMakeLists.txt b/hadoop-common-project/hadoop-common/src/CMakeLists.txt
index 942b19c..8b34881 100644
--- a/hadoop-common-project/hadoop-common/src/CMakeLists.txt
+++ b/hadoop-common-project/hadoop-common/src/CMakeLists.txt
@@ -16,6 +16,8 @@
 # limitations under the License.
 #

+SET(CUSTOM_OPENSSL_PREFIX /usr/local/opt/openssl)
+
 cmake_minimum_required(VERSION 2.6 FATAL_ERROR)

 # Default to release builds
@@ -116,8 +118,8 @@ set(T main/native/src/test/org/Apache/hadoop)
 GET_FILENAME_COMPONENT(HADOOP_ZLIB_LIBRARY ${ZLIB_LIBRARIES} NAME)

 SET(STORED_CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_FIND_LIBRARY_SUFFIXES})
-set_find_shared_library_version("1")
-find_package(BZip2 QUIET)
+set_find_shared_library_version("1.0")
+find_package(BZip2 REQUIRED)
 if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES)
     GET_FILENAME_COMPONENT(HADOOP_BZIP2_LIBRARY ${BZIP2_LIBRARIES} NAME)
     set(BZIP2_SOURCE_FILES
diff --git a/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml b/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml
index d2ddf89..ac8e351 100644
--- a/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml
+++ b/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml
@@ -17,4 +17,8 @@
 <!-- Put site-specific property overrides in this file. -->

 <configuration>
+<property>
+<name>io.compression.codec.bzip2.library</name>
+<value>libbz2.dylib</value>
+</property>
 </configuration>
diff --git a/hadoop-tools/hadoop-pipes/pom.xml b/hadoop-tools/hadoop-pipes/pom.xml
index 34c0110..70f23a4 100644
--- a/hadoop-tools/hadoop-pipes/pom.xml
+++ b/hadoop-tools/hadoop-pipes/pom.xml
@@ -52,7 +52,7 @@
                     <mkdir dir="${project.build.directory}/native"/>
                     <exec executable="cmake" dir="${project.build.directory}/native" 
                         failonerror="true">
-                      <arg line="${basedir}/src/ -DJVM_Arch_DATA_MODEL=${Sun.Arch.data.model}"/>
+                      <arg line="${basedir}/src/ -DJVM_Arch_DATA_MODEL=${Sun.Arch.data.model} -DOPENSSL_ROOT_DIR=/usr/local/opt/openssl"/>
                     </exec>
                     <exec executable="make" dir="${project.build.directory}/native" failonerror="true">
                       <arg line="VERBOSE=1"/>

  4. Construire un hadoop à partir des sources:

    mvn package -Pdist,native -DskipTests -Dtar -Dmaven.javadoc.skip=true

  5. Spécifiez Java_LIBRARY_PATH lors de l'exécution de hadoop:

    $ Java_LIBRARY_PATH=/usr/local/opt/openssl/lib:/opt/local/lib:/usr/lib hadoop-dist/target/hadoop-2.7.3/bin/hadoop checknative -a
16/10/14 20:16:32 INFO bzip2.Bzip2Factory: Successfully loaded & initialized native-bzip2 library libbz2.dylib
16/10/14 20:16:32 INFO zlib.ZlibFactory: Successfully loaded & initialized native-zlib library
Native library checking:
hadoop:  true /Users/admin/Desktop/hadoop/hadoop-dist/target/hadoop-2.7.3/lib/native/libhadoop.dylib
zlib:    true /usr/lib/libz.1.dylib
snappy:  true /usr/local/lib/libsnappy.1.dylib
lz4:     true revision:99
bzip2:   true /usr/lib/libbz2.1.0.dylib
openssl: true /usr/local/opt/openssl/lib/libcrypto.dylib
18
andrewdotn

Il manque quelques étapes dans la réponse de @ andrewdotn ci-dessus:

1) Pour l’étape (3), créez le correctif en ajoutant le texte posté dans un fichier texte, par exemple. "patch.txt", puis exécutez "git apply patch.txt"

2) En plus de copier les fichiers comme indiqué par javadba, certaines applications nécessitent également que vous définissiez:

export HADOOP_OPTS="-Djava.library.path=${HADOOP_HOME}/lib/native"
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HADOOP_HOME}/lib/native
export Java_LIBRARY_PATH=$Java_LIBRARY_PATH:${HADOOP_HOME}/lib/native
4
ilganeli

Pour mettre à jour @andrewdotn answer, voici le fichier patch.txt à utiliser avec Hadoop 2.8.1:

diff --git a/hadoop-common-project/hadoop-common/src/CMakeLists.txt b/hadoop-common-project/hadoop-common/src/CMakeLists.txt
index c93bfe78546..e8918f9ca29 100644
--- a/hadoop-common-project/hadoop-common/src/CMakeLists.txt
+++ b/hadoop-common-project/hadoop-common/src/CMakeLists.txt
@@ -20,6 +20,8 @@
 # CMake configuration.
 #

+SET(CUSTOM_OPENSSL_PREFIX /usr/local/opt/openssl)
+
 cmake_minimum_required(VERSION 2.6 FATAL_ERROR)

 list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/..)
@@ -50,8 +52,8 @@ get_filename_component(HADOOP_ZLIB_LIBRARY ${ZLIB_LIBRARIES} NAME)

 # Look for bzip2.
 set(STORED_CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_FIND_LIBRARY_SUFFIXES})
-hadoop_set_find_shared_library_version("1")
-find_package(BZip2 QUIET)
+hadoop_set_find_shared_library_version("1.0")
+find_package(BZip2 REQUIRED)
 if(BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES)
     get_filename_component(HADOOP_BZIP2_LIBRARY ${BZIP2_LIBRARIES} NAME)
     set(BZIP2_SOURCE_FILES
diff --git a/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml b/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml
index d2ddf893e49..ac8e351f1c8 100644
--- a/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml
+++ b/hadoop-common-project/hadoop-common/src/main/conf/core-site.xml
@@ -17,4 +17,8 @@
 <!-- Put site-specific property overrides in this file. -->

 <configuration>
+<property>
+<name>io.compression.codec.bzip2.library</name>
+<value>libbz2.dylib</value>
+</property>
 </configuration>
diff --git a/hadoop-tools/hadoop-pipes/pom.xml b/hadoop-tools/hadoop-pipes/pom.xml
index 8aafad0f7eb..d4832542265 100644
--- a/hadoop-tools/hadoop-pipes/pom.xml
+++ b/hadoop-tools/hadoop-pipes/pom.xml
@@ -55,7 +55,7 @@
                     <mkdir dir="${project.build.directory}/native"/>
                     <exec executable="cmake" dir="${project.build.directory}/native" 
                         failonerror="true">
-                      <arg line="${basedir}/src/ -DJVM_Arch_DATA_MODEL=${Sun.Arch.data.model}"/>
+                      <arg line="${basedir}/src/ -DJVM_Arch_DATA_MODEL=${Sun.Arch.data.model} -DOPENSSL_ROOT_DIR=/usr/local/opt/openssl"/>
                     </exec>
                     <exec executable="make" dir="${project.build.directory}/native" failonerror="true">
                       <arg line="VERBOSE=1"/>
1
aelesbao

L'étape nécessaire consiste à copier le *.dylib à partir du répertoire de construction des sources git dans le répertoire $HADOOP_HOME/<common dir>lib de votre plate-forme. Pour OS/X installé via brew c'est:

cp /git/hadoop/hadoop-dist/target/hadoop-2.7.1/lib/native/ /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/common/

Nous pouvons voir les libs nécessaires ici maintenant:

$ll /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/common/*.dylib
-rwxr-xr-x  1 macuser  staff  149100 Jun 13 13:44 /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/common/libhadoop.dylib
-rwxr-xr-x  1 macuser  staff  149100 Jun 13 13:44 /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/common/libhadoop.1.0.0.dylib

Et maintenant, la commande hadoop checknative fonctionne:

$hadoop checknative

6/06/15 09:10:59 INFO zlib.ZlibFactory: Successfully loaded & initialized native-zlib library
Native library checking:
hadoop:  true /usr/local/Cellar/hadoop/2.7.2/libexec/share/hadoop/common/libhadoop.dylib
zlib:    true /usr/lib/libz.1.dylib
snappy:  false
lz4:     true revision:99
bzip2:   false
openssl: false build does not support openssl.
1
javadba